The alien mission string will allow you to purchase both rebel and confederate ships if you complete it (Or, if its not supposed to, then something went screwy in my game). Personally, I say that the best ship in the game is the Confederate Cruiser (mine has: 1shield booster, 4shiels capacitors, a layer of each of the armors, 4-5proton turrets, 2fuel tanks, all of the speed/turnig upgrades, 2missle racks, 75missles, 2torpedo launchers, 75torpedoes, a ramscope, an auto refueler, 2 javelin pods, 999javelin rockets, a Confederate Patrol Ship bay, 4Confed patrol ships, a mass expantion or so, an afterburner, and the all-mighty particle beam.) Note: I realiz the the Confed Cruiser is probly the worst ship to have javelins with, but when you set the speed way up it covers up the slowness of the cruiser.
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