Yeah um, what this is for is for levels like captivating, where you have to pilot a transport yourself around a base or flak drone type object. What you do, once you have secured the planet and blockaded it with your ships, controll a ship and go to a point where the transport if directed to it, will stay clear of the hostile and choose the menu option "Go to my posiotion". I origionally thought this would make it follow you, but the transpot actually goes to the spot, from which you can direct it to the planet. While the transports en route you can gfo back and oversee the blockade.
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"How can i make it go faster"? -Me-